constrain.lims.csv_database

Easy to use functions to fetch sequences and objects from local csv database

Functions

add_annotations(list_of_parts[, ...])	Adds the neccessary annotations to a list of SeqRecord objects to be uploaded to the database
add_sequences_to_dataframe(list_of_DNA, ...)	Adds sequences to local csv databse.
add_unique_ids(list_of_parts[, path])	Adds unique ids to a list of SeqRecords.
change_row(row_index, csv_database_as_df, ...)	inserts a biopyton object into the database at a specific index
delete_row_df(row_index, which_df)	Deletes a row in the database without changing the namse of
get_box(box_number, csv_database_as_df)	Returns the plate from a specified csv_database.
get_database(name[, path])	Fetches the csv database as a pd.dataframe
get_dna_from_box_name(name, database_name[, ...])	fetch dna based on the name from the BOX database of choice.
get_dna_from_plate_name(name, database_name)	fetch dna based on the name from the PLATE database of choice.
get_plate(plate_number, csv_database_as_df)	Returns the plate from a specified csv_database.
get_unique_id([path])	Makes a single unique ID from the csv_database files.
update_database(dataframe, which_database[, ...])	Updates the database of choosing