Welcome to ConStrain’s documentation!
Our mission is to revolutionize the way in which we make biology. How do we do that? We pursue reproducible high-throughput strain construction by adopting literate programming with ConStrain. We hope you want to be part of the revolution. Below you will find documentation for how to install and use ConStrain.
Suppose you are interested in examples, head over to our notebooks. Feel free to reach out if something is unclear.
Features of ConStrain
Combinatorial library generation
HT cloning and transformation workflows
Flowbot One instructions
CSV-based LIMS system as well as integration to Benchling
Genotyping of microbial strains
Advanced Machine Learning of biological datasets with the AutoML H2O
Workflows for selecting enzyme homologs
Promoter selection workflows from RNA-seq datasets
Data analysis of large LC-MS datasets along with workflows for analysis
Getting started
To get started with making microbial strains in an HT manner please follow the steps below:
Install ConStrain. You will find the necessary information below under installation.
Check out our notebooks for inspiration to make HT strain construction with ConStrain.
You can start making your own workflows by importing ConStrain into either Google colab or Jupyter lab/notebooks.
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